NanoPlot statistics report

NanoPlot reports

Summary statistics

General summary
Average percent identity 98.3
Fraction of bases aligned 1.0
Mean read length 1,623.2
Mean read quality 20.2
Median percent identity 99.2
Median read length 513.0
Median read quality 23.0
Number of reads 2,423,980.0
Read length N50 5,578.0
STDEV read length 2,913.3
Total bases 3,934,707,451.0
Total bases aligned 3,800,259,209.0
Number, percentage and megabases of reads above quality cutoffs
>Q10 2420486 (99.9%) 3932.1Mb
>Q15 2273986 (93.8%) 3718.9Mb
>Q20 1768692 (73.0%) 2949.5Mb
>Q25 842528 (34.8%) 860.0Mb
>Q30 330002 (13.6%) 153.4Mb
Top 5 highest mean basecall quality scores and their read lengths
1 46.3 (72; 3b6d226b-d364-433b-ae41-f00820373190)
2 46.3 (116; a1cde4f3-4ade-4f89-be61-ae3bb654f7a3)
3 46.2 (143; 44b68710-35a0-499e-925c-e4f220f8c6d3)
4 46.1 (152; e468618c-9c40-4611-b2c5-cbd5abdc633d)
5 46.1 (223; 407b39d1-5e47-49f6-bf9e-d72d9cc8d10e)
Top 5 longest reads and their mean basecall quality score
1 77857 (15.9; 1fd43462-d3dd-4088-8701-7a2a3a5ccf7e)
2 72935 (17.3; dcfa6e2b-03f8-4a72-b447-05042d2b81cc)
3 71823 (17.4; 122057c4-ae10-45b0-a83c-b652715ffd6e)
4 70893 (23.3; 2901f882-dd1e-4457-ab76-9e3acdcb9eb8)
5 68909 (24.0; 94510695-5396-4497-aa7f-017d9cb933ea)

Plots

Weighted histogram of read lengths

Weighted histogram of read lengths after log transformation

Non weighted histogram of read lengths

Non weighted histogram of read lengths after log transformation

Yield by length

Read lengths vs Average read quality plot using dots

Read lengths vs Average read quality kde plot

Aligned read lengths vs Sequenced read length plot using dots

Aligned read lengths vs Sequenced read length kde plot

Read mapping quality vs Average basecall quality plot using dots

Read mapping quality vs Average basecall quality kde plot

Read length vs Read mapping quality plot using dots

Read length vs Read mapping quality kde plot

Percent identity vs Average Base Quality plot using dots

Percent identity vs Average Base Quality kde plot

Aligned read length vs Percent identity plot using dots

Aligned read length vs Percent identity kde plot

Dynamic histogram of percent identity